ACF	ACF
ACF.gls	ACF.gls
ACF.lme	ACF.lme
Alfalfa	Alfalfa
allCoef	allCoef
anova.gls	anova.gls
anova.lme	anova.lme
as.data.frame.groupedData	groupedData
as.matrix.corStruct	as.matrix.corStruct
as.matrix.pdMat	as.matrix.pdMat
as.matrix.reStruct	as.matrix.reStruct
asOneFormula	asOneFormula
Assay	Assay
asTable	asTable
asTable.groupedData	asTable
augPred	augPred
augPred.gls	augPred
augPred.lme	augPred
augPred.lmList	augPred
balancedGrouped	balancedGrouped
bdf	bdf
BodyWeight	BodyWeight
Cefamandole	Cefamandole
coef.corAR1	coef.corStruct
coef.corARMA	corARMA
coef.corARMAd	coef.corStruct
coef.corCAR1	coef.corStruct
coef.corCompSymm	coef.corStruct
coef.corLin	coef.corStruct
coef.corNatural	coef.corStruct
coef.corSpatial	coef.corStruct
coef.corSpher	coef.corStruct
coef.corStruct	coef.corStruct
coef.corSymm	coef.corStruct
coef.gnls	coef.gnls
coef.lme	coef.lme
coef.lmList	coef.lmList
coef.modelStruct	coef.modelStruct
coef.pdBlocked	coef.pdMat
coef.pdCompSymm	coef.pdMat
coef.pdDiag	coef.pdMat
coef.pdIdent	coef.pdMat
coef.pdMat	coef.pdMat
coef.pdNatural	coef.pdMat
coef.pdSymm	coef.pdMat
coef.reStruct	coef.reStruct
coef.summary.nlsList	coef.corStruct
coef.varComb	coef.varFunc
coef.varConstPower	coef.varFunc
coef.varConstProp	coef.varFunc
coef.varExp	coef.varFunc
coef.varFixed	coef.varFunc
coef.varFunc	coef.varFunc
coef.varIdent	coef.varFunc
coef.varPower	coef.varFunc
coef<-	Coef
coef<-.corAR1	coef.corStruct
coef<-.corARMA	coef.corStruct
coef<-.corCAR1	coef.corStruct
coef<-.corCompSymm	coef.corStruct
coef<-.corLin	coef.corStruct
coef<-.corNatural	coef.corStruct
coef<-.corSpatial	coef.corStruct
coef<-.corSpher	coef.corStruct
coef<-.corStruct	coef.corStruct
coef<-.corSymm	coef.corStruct
coef<-.modelStruct	coef.modelStruct
coef<-.pdBlocked	coef.pdMat
coef<-.pdMat	coef.pdMat
coef<-.reStruct	coef.reStruct
coef<-.varComb	coef.varFunc
coef<-.varConstPower	coef.varFunc
coef<-.varConstProp	coef.varFunc
coef<-.varExp	coef.varFunc
coef<-.varFixed	coef.varFunc
coef<-.varIdent	coef.varFunc
coef<-.varPower	coef.varFunc
coefficients<-	Coef
collapse	collapse
collapse.groupedData	collapse.groupedData
compareFits	compareFits
comparePred	comparePred
comparePred.gls	comparePred
comparePred.lme	comparePred
comparePred.lmList	comparePred
corAR1	corAR1
corARMA	corARMA
corCAR1	corCAR1
corClasses	corClasses
corCompSymm	corCompSymm
corExp	corExp
corFactor	corFactor
corFactor.corAR1	corFactor.corStruct
corFactor.corARMA	corFactor.corStruct
corFactor.corCAR1	corFactor.corStruct
corFactor.corCompSymm	corFactor.corStruct
corFactor.corNatural	corFactor.corStruct
corFactor.corSpatial	corFactor.corStruct
corFactor.corStruct	corFactor.corStruct
corFactor.corSymm	corFactor.corStruct
corGaus	corGaus
corIdent	nlme-deprecated
corLin	corLin
corMatrix	corMatrix
corMatrix.corAR1	corMatrix.corStruct
corMatrix.corARMA	corMatrix.corStruct
corMatrix.corCAR1	corMatrix.corStruct
corMatrix.corCompSymm	corMatrix.corStruct
corMatrix.corNatural	corMatrix.corStruct
corMatrix.corSpatial	corMatrix.corStruct
corMatrix.corStruct	corMatrix.corStruct
corMatrix.corSymm	corMatrix.corStruct
corMatrix.pdBlocked	corMatrix.pdMat
corMatrix.pdCompSymm	corMatrix.pdMat
corMatrix.pdDiag	corMatrix.pdMat
corMatrix.pdIdent	corMatrix.pdMat
corMatrix.pdMat	corMatrix.pdMat
corMatrix.pdSymm	corMatrix.pdMat
corMatrix.reStruct	corMatrix.reStruct
corNatural	corNatural
corRatio	corRatio
corSpatial	corSpatial
corSpher	corSpher
corStruct	corClasses
corSymm	corSymm
covariate<-	Covariate
covariate<-.varFunc	Covariate.varFunc
Dialyzer	Dialyzer
Dim	Dim
Dim.corSpatial	Dim.corSpatial
Dim.corStruct	Dim.corStruct
Dim.default	Dim
Dim.pdCompSymm	Dim.pdMat
Dim.pdDiag	Dim.pdMat
Dim.pdIdent	Dim.pdMat
Dim.pdMat	Dim.pdMat
Dim.pdNatural	Dim.pdMat
Dim.pdSymm	Dim.pdMat
Earthquake	Earthquake
ergoStool	ergoStool
Fatigue	Fatigue
fdHess	fdHess
fitted.glsStruct	fitted.glsStruct
fitted.gnlsStruct	fitted.gnlsStruct
fitted.lme	fitted.lme
fitted.lmeStruct	fitted.lmeStruct
fitted.lmList	fitted.lmList
fitted.nlmeStruct	fitted.nlmeStruct
fixed.effects	fixed.effects
fixed.effects.lmList	fixef.lmList
fixef	fixed.effects
fixef.lmList	fixef.lmList
formula.pdBlocked	formula.pdBlocked
formula.pdMat	formula.pdMat
formula.reStruct	formula.reStruct
gapply	gapply
Gasoline	Gasoline
getCovariate	getCovariate
getCovariate.corSpatial	getCovariate.corStruct
getCovariate.corStruct	getCovariate.corStruct
getCovariate.data.frame	getCovariate.data.frame
getCovariate.varFunc	getCovariate.varFunc
getCovariateFormula	getCovariateFormula
getData	getData
getData.gls	getData.gls
getData.gnls	getData.gls
getData.lme	getData.lme
getData.lmList	getData.lmList
getData.nlme	getData.lme
getData.nls	getData.lme
getGroups	getGroups
getGroups.corStruct	getGroups.corStruct
getGroups.data.frame	getGroups.data.frame
getGroups.gls	getGroups.gls
getGroups.lme	getGroups.lme
getGroups.lmList	getGroups.lmList
getGroups.varFunc	getGroups.varFunc
getGroupsFormula	getGroupsFormula
getGroupsFormula.default	getGroupsFormula
getGroupsFormula.gls	getGroupsFormula
getGroupsFormula.lme	getGroupsFormula
getGroupsFormula.lmList	getGroupsFormula
getGroupsFormula.reStruct	getGroupsFormula
getResponse	getResponse
getResponse.data.frame	getResponse
getResponseFormula	getResponseFormula
getVarCov	getVarCov
getVarCov.gls	getVarCov
getVarCov.lme	getVarCov
gls	gls
glsApVar	gls-internal
glsControl	glsControl
glsEstimate	gls-internal
glsObject	glsObject
glsStruct	glsStruct
Glucose	Glucose
Glucose2	Glucose2
gnls	gnls
gnlsControl	gnlsControl
gnlsObject	gnlsObject
gnlsStruct	gnlsStruct
groupedData	groupedData
gsummary	gsummary
Gun	Gun
IGF	IGF
Initialize	Initialize
Initialize.corAR1	Initialize.corStruct
Initialize.corARMA	Initialize.corStruct
Initialize.corCAR1	Initialize.corStruct
Initialize.corCompSymm	Initialize.corStruct
Initialize.corLin	Initialize.corStruct
Initialize.corNatural	Initialize.corStruct
Initialize.corSpatial	Initialize.corStruct
Initialize.corSpher	Initialize.corStruct
Initialize.corStruct	Initialize.corStruct
Initialize.corSymm	Initialize.corStruct
Initialize.glsStruct	Initialize.glsStruct
Initialize.gnlsStruct	gnlsStruct
Initialize.lmeStruct	Initialize.lmeStruct
Initialize.reStruct	Initialize.reStruct
Initialize.varComb	Initialize.varFunc
Initialize.varConstPower	Initialize.varFunc
Initialize.varConstProp	Initialize.varFunc
Initialize.varExp	Initialize.varFunc
Initialize.varFixed	Initialize.varFunc
Initialize.varFunc	Initialize.varFunc
Initialize.varIdent	Initialize.varFunc
Initialize.varPower	Initialize.varFunc
intervals	intervals
intervals.gls	intervals.gls
intervals.lme	intervals.lme
intervals.lmList	intervals.lmList
isBalanced	isBalanced
isBalanced.groupedData	isBalanced
isInitialized	isInitialized
isInitialized.pdBlocked	isInitialized
isInitialized.pdMat	isInitialized
LDEsysMat	LDEsysMat
lme	lme
lme.formula	lme
lme.groupedData	lme.groupedData
lme.lmList	lme.lmList
lmeControl	lmeControl
lmeObject	lmeObject
lmeStruct	lmeStruct
lmList	lmList
lmList.formula	lmList
lmList.groupedData	lmList.groupedData
logDet	logDet
logDet.corStruct	logDet.corStruct
logDet.pdBlocked	logDet.pdMat
logDet.pdCompSymm	logDet.pdMat
logDet.pdDiag	logDet.pdMat
logDet.pdIdent	logDet.pdMat
logDet.pdMat	logDet.pdMat
logDet.pdNatural	logDet.pdMat
logDet.pdSymm	logDet.pdMat
logDet.reStruct	logDet.reStruct
logLik.corStruct	logLik.corStruct
logLik.gls	logLik.lme
logLik.glsStruct	logLik.glsStruct
logLik.gnls	logLik.gnls
logLik.gnlsStruct	logLik.gnlsStruct
logLik.lme	logLik.lme
logLik.lmeStruct	logLik.lmeStruct
logLik.lmeStructInt	logLik.lmeStruct
logLik.lmList	logLik.lmList
logLik.reStruct	logLik.reStruct
logLik.varComb	logLik.varFunc
logLik.varFunc	logLik.varFunc
Machines	Machines
MathAchieve	MathAchieve
MathAchSchool	MathAchSchool
matrix<-	Matrix
matrix<-.pdBlocked	Matrix.pdMat
matrix<-.pdMat	Matrix.pdMat
matrix<-.reStruct	Matrix.reStruct
Meat	Meat
Milk	Milk
model.matrix.reStruct	model.matrix.reStruct
Muscle	Muscle
Names	Names
Names.formula	Names.formula
Names.listForm	Names.formula
Names.pdBlocked	Names.pdBlocked
Names.pdMat	Names.pdMat
Names.reStruct	Names.reStruct
Names<-	Names
Names<-.pdBlocked	Names.pdBlocked
Names<-.pdMat	Names.pdMat
Names<-.reStruct	Names.reStruct
needUpdate	needUpdate
needUpdate.corStruct	needUpdate.modelStruct
needUpdate.default	needUpdate
needUpdate.modelStruct	needUpdate.modelStruct
needUpdate.reStruct	needUpdate.modelStruct
needUpdate.varComb	needUpdate
needUpdate.varIdent	needUpdate
nfGroupedData	nlme-deprecated
Nitrendipene	Nitrendipene
nlme	nlme
nlme-deprecated	nlme-deprecated
nlme.formula	nlme
nlme.nlsList	nlme.nlsList
nlmeControl	nlmeControl
nlmeObject	nlmeObject
nlmeStruct	nlmeStruct
nlsList	nlsList
nlsList.formula	nlsList
nlsList.selfStart	nlsList.selfStart
nmGroupedData	nlme-deprecated
Oats	Oats
Orthodont	Orthodont
Ovary	Ovary
Oxboys	Oxboys
Oxide	Oxide
pairs.compareFits	pairs.compareFits
pairs.lme	pairs.lme
pairs.lmList	pairs.lmList
PBG	PBG
pdBlocked	pdBlocked
pdClasses	pdClasses
pdCompSymm	pdCompSymm
pdConstruct	pdConstruct
pdConstruct.pdBlocked	pdConstruct.pdBlocked
pdConstruct.pdCompSymm	pdConstruct
pdConstruct.pdDiag	pdConstruct
pdConstruct.pdIdent	pdConstruct
pdConstruct.pdLogChol	pdConstruct
pdConstruct.pdMat	pdConstruct
pdConstruct.pdNatural	pdConstruct
pdConstruct.pdSymm	pdConstruct
pdDiag	pdDiag
pdFactor	pdFactor
pdFactor.pdBlocked	pdFactor
pdFactor.pdCompSymm	pdFactor
pdFactor.pdDiag	pdFactor
pdFactor.pdIdent	pdFactor
pdFactor.pdLogChol	pdFactor
pdFactor.pdMat	pdFactor
pdFactor.pdNatural	pdFactor
pdFactor.pdSymm	pdFactor
pdFactor.reStruct	pdFactor.reStruct
pdIdent	pdIdent
pdLogChol	pdLogChol
pdMat	pdMat
pdMatrix	pdMatrix
pdMatrix.pdBlocked	pdMatrix
pdMatrix.pdCompSymm	pdMatrix
pdMatrix.pdDiag	pdMatrix
pdMatrix.pdIdent	pdMatrix
pdMatrix.pdMat	pdMatrix
pdMatrix.pdNatural	pdMatrix
pdMatrix.pdSymm	pdMatrix
pdMatrix.reStruct	pdMatrix.reStruct
pdNatural	pdNatural
pdSymm	pdSymm
Phenobarb	Phenobarb
phenoModel	phenoModel
Pixel	Pixel
plot.ACF	plot.ACF
plot.augPred	plot.augPred
plot.compareFits	plot.compareFits
plot.gls	plot.gls
plot.intervals.lmList	plot.intervals.lmList
plot.lme	plot.lme
plot.lmList	plot.lmList
plot.nffGroupedData	plot.nffGroupedData
plot.nfnGroupedData	plot.nfnGroupedData
plot.nls	plot.lme
plot.nmGroupedData	plot.nmGroupedData
plot.pdMat	pdMat
plot.ranef.lme	plot.ranef.lme
plot.ranef.lmList	plot.ranef.lmList
plot.simulate.lme	simulate.lme
plot.Variogram	plot.Variogram
pooledSD	pooledSD
predict.gls	predict.gls
predict.gnls	predict.gnls
predict.lme	predict.lme
predict.lmList	predict.lmList
predict.nlme	predict.nlme
print.anova.lme	anova.lme
print.compareFits	compareFits
print.corNatural	corNatural
print.intervals.gls	intervals.gls
print.intervals.lme	intervals.lme
print.intervals.lmList	intervals.lmList
print.lmList	lmList
print.ranef.lme	ranef.lme
print.reStruct	reStruct
print.simulate.lme	simulate.lme
print.summary.lme	summary.lme
print.summary.pdMat	print.summary.pdMat
print.varComb	print.varFunc
print.VarCorr.lme	VarCorr
print.VarCov	getVarCov
print.varFunc	print.varFunc
qqnorm.gls	qqnorm.gls
qqnorm.lm	qqnorm.lme
qqnorm.lme	qqnorm.lme
qqnorm.lmList	qqnorm.lme
qqnorm.nls	qqnorm.lme
Quinidine	Quinidine
quinModel	quinModel
Rail	Rail
random.effects	random.effects
random.effects.lme	ranef.lme
random.effects.lmList	ranef.lmList
ranef	random.effects
ranef.lme	ranef.lme
ranef.lmList	ranef.lmList
RatPupWeight	RatPupWeight
recalc	recalc
recalc.corAR1	recalc.corStruct
recalc.corARMA	recalc.corStruct
recalc.corCAR1	recalc.corStruct
recalc.corCompSymm	recalc.corStruct
recalc.corNatural	recalc.corStruct
recalc.corSpatial	recalc.corStruct
recalc.corStruct	recalc.corStruct
recalc.corSymm	recalc.corStruct
recalc.modelStruct	recalc.modelStruct
recalc.reStruct	recalc.reStruct
recalc.varFunc	recalc.varFunc
recalc.varIdent	recalc.varFunc
Relaxin	Relaxin
Remifentanil	Remifentanil
residuals.gls	residuals.gls
residuals.glsStruct	residuals.glsStruct
residuals.gnls	residuals.gls
residuals.gnlsStruct	residuals.gnlsStruct
residuals.lme	residuals.lme
residuals.lmeStruct	residuals.lmeStruct
residuals.lmList	residuals.lmList
residuals.nlmeStruct	residuals.nlmeStruct
reStruct	reStruct
simulate.lme	simulate.lme
solve.pdBlocked	solve.pdMat
solve.pdDiag	solve.pdMat
solve.pdIdent	solve.pdMat
solve.pdLogChol	solve.pdMat
solve.pdMat	solve.pdMat
solve.pdNatural	solve.pdMat
solve.pdSymm	solve.pdMat
solve.reStruct	solve.reStruct
Soybean	Soybean
splitFormula	splitFormula
Spruce	Spruce
summary.corAR1	summary.corStruct
summary.corARMA	summary.corStruct
summary.corCAR1	summary.corStruct
summary.corCompSymm	summary.corStruct
summary.corExp	summary.corStruct
summary.corGaus	summary.corStruct
summary.corLin	summary.corStruct
summary.corNatural	summary.corStruct
summary.corRatio	summary.corStruct
summary.corSpher	summary.corStruct
summary.corStruct	summary.corStruct
summary.corSymm	summary.corStruct
summary.gls	summary.gls
summary.lme	summary.lme
summary.lmList	summary.lmList
summary.modelStruct	summary.modelStruct
summary.nlsList	summary.nlsList
summary.pdBlocked	summary.pdMat
summary.pdCompSymm	summary.pdMat
summary.pdDiag	summary.pdMat
summary.pdIdent	summary.pdMat
summary.pdLogChol	summary.pdMat
summary.pdMat	summary.pdMat
summary.pdNatural	summary.pdMat
summary.pdSymm	summary.pdMat
summary.reStruct	summary.modelStruct
summary.varComb	summary.varFunc
summary.varConstPower	summary.varFunc
summary.varConstProp	summary.varFunc
summary.varExp	summary.varFunc
summary.varFixed	summary.varFunc
summary.varFunc	summary.varFunc
summary.varIdent	summary.varFunc
summary.varPower	summary.varFunc
Tetracycline1	Tetracycline1
Tetracycline2	Tetracycline2
update.corStruct	update.modelStruct
update.gls	gls
update.groupedData	groupedData
update.lme	lme
update.lmList	lmList
update.modelStruct	update.modelStruct
update.nlsList	nlsList
update.reStruct	update.modelStruct
update.varComb	update.varFunc
update.varConstPower	update.varFunc
update.varConstProp	update.varFunc
update.varExp	update.varFunc
update.varExpon	update.varFunc
update.varFunc	update.varFunc
update.varPower	update.varFunc
varClasses	varClasses
varComb	varComb
varConstPower	varConstPower
varConstProp	varConstProp
VarCorr	VarCorr
VarCorr.lme	VarCorr
VarCorr.pdBlocked	VarCorr
VarCorr.pdMat	VarCorr
varExp	varExp
varFixed	varFixed
varFunc	varFunc
varIdent	varIdent
Variogram	Variogram
Variogram.corExp	Variogram.corExp
Variogram.corGaus	Variogram.corGaus
Variogram.corLin	Variogram.corLin
Variogram.corRatio	Variogram.corRatio
Variogram.corSpatial	Variogram.corSpatial
Variogram.corSpher	Variogram.corSpher
Variogram.default	Variogram.default
Variogram.gls	Variogram.gls
Variogram.lme	Variogram.lme
varPower	varPower
varWeights	varWeights
varWeights.glsStruct	varWeights.glsStruct
varWeights.lmeStruct	varWeights.lmeStruct
varWeights.varComb	varWeights
varWeights.varFunc	varWeights
Wafer	Wafer
Wheat	Wheat
Wheat2	Wheat2
[.groupedData	groupedData
[.pdBlocked	Extract.pdMat
[.pdMat	Extract.pdMat
[.reStruct	reStruct
[<-.pdMat	Extract.pdMat
